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Latest publications

  • Understanding forage grass genomes beyond single nucleotide variation - an example on self-incompatibility

    Published Papers
    Issue date:

    Studer B, Rohner M and Manzanares C
    Mapping Intimacies
    https://www.sciencegate.app/document/10.5507/vup.21.24459677.11

  • An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome

    Published Papers
    Issue date:

    McCartney AM, Hilario E, Choi SS, Guhlin J, Prebble JM, Houliston G, Buckley TR and Chagné D
    Molecular Ecology Resources
    https://pubmed.ncbi.nlm.nih.gov/33955186/

  • The design and application of a 50 K SNP chip for a threatened Aotearoa New Zealand passerine, the hihi

    Published Papers
    Issue date:

    Lee KD, Millar CD, Brekke P, Whibley A, Ewen JG, Hingston M, Zhu A and Santure AW
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13480

  • A chromosome‐scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition

    Published Papers
    Issue date:

    Wu C, Deng C, Hilario E, Albert NW, Lafferty D, Grierson ERP, Plunkett BJ, Elborough C, Saei A, Günther CS, Ireland H, Yocca A, Edger PP, Jaakola L, Karppinen K, Grande A, Kylli R, Lehtola V-P, Allan AC, Espley RV and Chagné, D
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13467

  • Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity

    Published Papers
    Issue date:

    Leask M, Lovegrove M, Walker A, Duncan E and Dearden PK
    BMC Ecology and Evolution
    https://doi.org/10.1186/s12862-021-01885-8

  • Termite gas emissions select for hydrogenotrophic microbial communities in termite mounds

    Published Papers
    Issue date:

    Chiri E, Nauer PA, Lappan R, Jirapanjawat T, Waite DW, Handley KM, Hugenholtz P, Cook PLM, Arndt SK, Greening C
    PNAS, 118: e2102625118.
    https://www.pnas.org/content/118/30/e2102625118

  • Genomic data of different resolutions reveal consistent inbreeding estimates but contrasting homozygosity landscapes for the threatened Aotearoa New Zealand hihi

    Published Papers
    Issue date:

    Duntsch L, Whibley A, Brekke P, Ewen JG and Santure AW
    Molecular Ecology
    https://doi.org/10.1111/mec.16068

  • Genomic adaptations enabling Acidithiobacillus distribution across wide ranging hot spring temperatures and pHs

    Published Papers
    Issue date:

    Sriaporn C, Campbell KA, Van Kranendonk MJ, Handley KM. 
    Microbiome, 9,135, 2021
    https://doi.org/10.1186/s40168-021-01090-1 
    Video abstract: https://www.youtube.com/watch?v=kqM1jPyMRyc)

  • Heterozygous ANKRD17 loss-of-function variants cause a syndrome with intellectual disability, speech delay, and dysmorphism

    Published Papers
    Issue date:

    Chopra M, McEntagart M, Clayton-Smith J, Platzer K, Shukla A, Girisha KM, Kaur A, Kaur P, Pfundt R, Veenstra-Knol H, Mancini GMS, Cappuccio G, Brunetti-Pierri N, Kortüm F, Hempel M, Denecke J, Lehman A, Kleefstra T, Stuurman KE, Wilke M, Thompson ML, Bebin EM, Bijlsma EK, Hoffer MJV, Peeters-Scholte C, Slavotinek A, Weiss WA, Yip T, Hodoglugil U, Whittle A, diMonda J, Neira J, Yang S, Kirby A, Pinz H, Lechner R, Sleutels F, Helbig I, McKeown S, Helbig K, Willaert R, Juusola J, Semotok J, Hadonou M, Short J, Yachelevich N, Lala S, Fernández-Jaen A, Pelayo JP, Klöckner C, Kamphausen SB, Abou Jamra R, Arelin M, Innes AM, Niskakoski A, Amin S, Williams M, Evans J, Smithson S, Smedley D, de Burca A, Kini U, Delatycki MB, Gallacher L, Yeung A, Pais L, Field M, Martin E, Charles P, Courtin T, Keren B, Iascone M, Cereda A, Poke G, Abadie V, Chalouhi C, Parthasarathy P, Halliday BJ, Robertson SP, Lyonnet S, Amiel J and Gordon CT
    American Journal of Human Genetics
    https://www.cell.com/ajhg/fulltext/S0002-9297(21)00138-5

  • Evolution of the “world’s only alpine parrot”: Genomic adaptation or phenotypic plasticity, behaviour and ecology?

    Published Papers
    Issue date:

    Martini D, Dussex N, Robertson BC, Gemmell NJ and Knapp M
    Molecular Ecology
    https://doi.org/10.1111/mec.15978

  • Current applications and future promise of genetic/genomic data for conservation in an Aotearoa New Zealand context

    Published Papers
    Issue date:

    Forsdick NJ, Adams CIM, Alexander A, Clark AC, Collier-Robinson L, Cubrinovska I, Dowgray MC, Dowle EJ, Duntsch L, Galla SJ, Howell L, Magid M, Rayne A, Verry AJF, Wold JR and Steeves TE
    EcoEvoRxiv
    https://ecoevorxiv.org/7bnjw preprint

  • Tools for successful proliferation: Diverse strategies of nutrient acquisition by a benthic cyanobacterium

    Published Papers
    Issue date:

    Tee HS, Waite D, Payne L, Middleditch M, Wood S, Handley KM
    The ISME Journal, 14, 2020
    https://doi.org/10.1038/s41396-020-0676-5