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Data

Working with providers, Genomics Aotearoa is aiming to develop a national genomics data archive, with appropriate guardianship, to support our research.

Genomics Aotearoa plans to manage data storage and access within a Māori values context.

For more information, contact Peter Dearden, Director of Genomics Aotearoa: peter.dearden@otago.ac.nz

Available data


Snapper

Description: RNA-seq data for domesticated and wild type snapper (Chrysophrys auratus) individuals reared under high and low temperatures

Access: https://cloudstor.aarnet.edu.au/plus/s/LfwXwoPIw8bDj6w  Contact Maren Wellenreuther for password access: maren.wellenreuther@plantandfood.co.nz

Publication:
Wellenreuther M, Le Luyer J, Cook D, Ritchie PA, Bernatchez L
'Domestication and temperature modulate gene expression signatures and growth in the Australasian snapper Chrysophrys auratus'
G3: Genes, Genomes, Genetics, January 2019, 9 (1), 105-116
https://doi.org/10.1534/g3.118.200647


Description: Genome assembly version 1.0 of Chrysophrys auratus including the allpaths assembly, and the super scaffold level assembly

Access: https://cloudstor.aarnet.edu.au/plus/s/eLyvIRy53MSGKm2  Contact Maren Wellenreuther for password access: maren.wellenreuther@plantandfood.co.nz

Publication:
Catanach A, Crowhurst R, Deng C, David C, Bernatchez L, Wellenreuther M
'The genomic pool of standing structural variation outnumbers single nucleotide polymorphism by three-fold in the marine teleost Chrysophrys auratus'
Molecular Ecology (in press)