Training events

The course will be held at University of Auckland, City Campus. The registration deadline is September 11. Register your interest here.

WORKSHOP OUTLINE

Day 1

• Bash scripting
• Read quality filtering
• Prokaryotic metagenome assembly

Day 2

• Assembly assessment and binning

Day 3

• Prokaryotic and viral gene prediction and annotation

Day 4

• Data analyses and visualisation

ORGANISERS

Genomics Aotearoa (University of Auckland): Dr Kim Handley, Dr Michael Hoggard, Dr Annie West, Jian Sheng Boey

NeSI: Dinindu Senanayake

For more information contact Jian Sheng Boey.

Hosted at the University of Otago, the Bioinformatics Spring School 2022 is a week long training event for researchers, supported by Genomics Aotearoa and the New Zealand eScience Infrastructure (NeSI).

Applications close August 31. Find out more and register your interest.

Co-hosted by Genomics Aotearoa and NeSI, this online workshop focuses on:

• Quality assessment
• Trimming and filtering
• Mapping and read counts
• Differential expression analysis
• Over-representation analysis

This workshop assumes the learner has no prior experience with RNA-seq but does assume some familiarity with R and bash.

This workshop is fully online and is hands-on. It will be run on the NeSI High Performance Computing (HPC) platforms – you will only require a working computer with an internet connection and a browser.

There is no cost associated with this workshop.

You can preview the material for this workshop here.

Register for this workshop at Eventbrite.

If you have any questions about this workshop, including whether they are suitable for you, please contact Tyler McInnes.

https://www.eventbrite.co.nz/e/introduction-to-r-for-genomics-tickets-337576509427

https://www.eventbrite.co.nz/e/online-workflow-code-along-intro-to-snakemake-tickets-309078741837

https://www.eventbrite.co.nz/e/rna-seq-workshop-online-tickets-310214849967

https://www.eventbrite.co.nz/e/introduction-to-r-for-genomics-tickets-310212121807

https://www.eventbrite.co.nz/e/online-introduction-to-bash-scripting-and-hpc-job-scheduler-tickets-310213666427

https://www.eventbrite.co.nz/e/online-introduction-to-bash-scripting-and-hpc-job-scheduler-tickets-260764522707

https://www.eventbrite.co.nz/e/rna-seq-workshop-online-tickets-260758003207

https://www.eventbrite.co.nz/e/introduction-to-r-for-genomics-tickets-260755475647

https://www.eresearchnz2022.org.nz/

https://foreal17.github.io/2022-01-26-online/

https://otagocarpentries.github.io/bioinformatics-spring-school-2021/

Expression of Interest: https://otago.au1.qualtrics.com/jfe/form/SV_5yFqy1tOdKTX3AW

https://www.scienceevents.co.nz/mapnet

https://genetics.org.au/2021-gsa-conference/

https://www.rseconference.nz/

Practical workshop on the analysis of reduced representation libraries using Stacks