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Latest publications

  • Genome‐wide analysis reveals the genetic stock structure of hoki (Macruronus novaezelandiae)

    Published Papers
    Issue date:

    Koot E, Wu C, Ruza I, Hilario E, Storey R, Wells R, Chagné D and Wellenreuther M
    Evolutionary Applications
    https://doi.org/10.1111/eva.13317

  • Insights into the effect of human civilization on Malus evolution and domestication

    Published Papers
    Issue date:

    Chen P, Li Z, Zhang D, Shen W, Xie Y, Zhang J, Jiang L, Li X, Shen X, Geng D, Wang L, Niu C, Bao C, Yan M, Li H, Li C, Yan Y, Zou Y, Micheletti D, Koot E, Ma F and Guan Q
    Plant Biotechnology Journal
    https://doi.org/10.1111/pbi.13648

  • The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae

    Published Papers
    Issue date:

    Ireland HS, Wu C, Deng CH, Hilario E, Saei A, Erasmuson S, Crowhurst RN, David KM, Schaffer RJ and Chagné D
    Horticulture Research, 8, 2021
    https://www.nature.com/articles/s41438-021-00662-4

  • Genome streamlining, plasticity and metabolic versatility distinguish co-occurring toxic and non-toxic cyanobacterial strains of Microcoleus

    Published Papers
    Issue date:

    Tee HS, Wood SA, Bouma-Gregson K, Lear G, Handley KM
    mBio
    https://doi.org/10.1128/mBio.02235-21

  • The relevance of pedigrees in the conservation genomics era

    Published Papers
    Issue date:

    Galla SJ, Brown L, Couch-Lewis(Ngāi Tahu: Te Hapū o Ngāti Wheke, Ngāti Waewae), Cubrinovska I, Eason D, Gooley RM, Hamilton JA, Heath JA, Hauser SS, Latch EK, Matocq MD, Richardson A, Wold JR, Hogg CJ, Santure AW and Steeves TE
    Molecular Ecology
    https://doi.org/10.1111/mec.16192

  • Genomic signatures of parallel alpine adaptation in recently evolved flightless insects

    Published Papers
    Issue date:

    McCulloch GA, Guhlin J, Dutoit L, Harrop TWR, Dearden P K and Waters JM
    Molecular Ecology
    https://doi.org/10.1111/mec.16204

  • Population genomics of the critically endangered kākāpō

    Published Papers
    Issue date:

    Dussex N, van der Valk T, Morales HE, Wheat CW, Díez-del-Molino D, von Seth J, Foster Y, Kutschera VE, Guschanski K, Rhie A, Phillippy AM, Korlach J, Howe K, Chow W, Pelan S, Mendes Damas JD, Lewin HA, Hastie AR, Formenti G, Fedrigo O, Guhlin J, Harrop TWR, Le Lec MF, Dearden PK, Haggerty L, Martin FJ, Kodali V, Thibaud-Nissen F, Iorns D, Knapp M, Gemmell NJ, Robertson F, Moorhouse R, Digby A, Eason D, Vercoe D, Howard J, Jarvis ED, Robertson BC and Dalén L
    Cell Genomics
    https://doi.org/10.1016/j.xgen.2021.100002

  • Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling

    Published Papers
    Issue date:
  • Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern

    Published Papers
    Issue date:

    Wold J, Koepfli K-P, Galla SJ, Eccles D, Hogg CJ, Le Lec MF, Guhlin J, Santure AW and Steeves TE
    Molecular Ecology
    https://doi.org/10.1111/mec.16141

  • Understanding forage grass genomes beyond single nucleotide variation - an example on self-incompatibility

    Published Papers
    Issue date:

    Studer B, Rohner M and Manzanares C
    Mapping Intimacies
    https://www.sciencegate.app/document/10.5507/vup.21.24459677.11

  • An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome

    Published Papers
    Issue date:

    McCartney AM, Hilario E, Choi SS, Guhlin J, Prebble JM, Houliston G, Buckley TR and Chagné D
    Molecular Ecology Resources
    https://pubmed.ncbi.nlm.nih.gov/33955186/

  • The design and application of a 50 K SNP chip for a threatened Aotearoa New Zealand passerine, the hihi

    Published Papers
    Issue date:

    Lee KD, Millar CD, Brekke P, Whibley A, Ewen JG, Hingston M, Zhu A and Santure AW
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13480