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Latest publications

  • Leveraging an existing whole‐genome resequencing population data set to characterize toll‐like receptor gene diversity in a threatened bird

    Published Papers
    Issue date:

    Magid M, Wold JR, Moraga R, Cubrinovska I, Houston DM, Gartrell BD and Steeves TE
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13656

  • First Chromosome-Scale Assembly and Deep Floral-Bud Transcriptome of a Male Kiwifruit

    Published Papers
    Issue date:

    Tahir J, Crowhurst R, Deroles S, Hilario E, Deng C, Schaffer R, Le Lievre L, Brendolise C, Chagné D, Gardiner SE, Knaebel M, Catanach A, McCallum J, Datson P, Thomson S, Brownfield LR, Nardozza S and Pilkington SM
    Frontiers in Genetics
    https://doi.org/10.3389/fgene.2022.852161

  • Comparing genome‐based estimates of relatedness for use in pedigree‐based conservation management

    Published Papers
    Issue date:

    Hauser SS, Galla SJ, Putnam AS, Steeves TE and Latch EK
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13630

  • Chromosome‐scale reference genome provides insights into the genetic origin and grafting‐mediated stress tolerance of Malus prunifolia

    Published Papers
    Issue date:

    Li Z, Wang L, He J, Li X, Hou N, Guo J, Niu C, Li C, Liu S, Xu J, Xie Y, Zhang D, Shen X, Lu L, Geng D, Chen P, Jiang L, Wang L, Li H, Malnoy M, Deng C, Zou Y, Li C, Zhan X, Dong Y, Notaguchi M, Ma F, Xu Q and Guan Q
    Plant Biotechnology Journal
    https://doi.org/10.1111/pbi.13817

  • Transposon insertions regulate genome‐wide allele‐specific expression and underpin flower colour variations in apple (Malus spp.)

    Published Papers
    Issue date:

    Tian Y, Thrimawithana A, Ding T, Guo J, Gleave A, Chagné D, Ampomah-Dwamena C, Ireland HS, Schaffer RJ, Luo Z, Wang M, An X, Wang D, Gao Y, Wang K, Zhang H, Zhang R, Zhou Z, Yan Z, Zhang L, Zhang C, Cong P, Deng CH and Yao J-L.
    Plant Biotechnology Journal
    https://doi.org/10.1111/pbi.13806

  • Comparison of Reptilian Genomes Reveals Deletions Associated with the Natural Loss of γδ T Cells in Squamates

    Published Papers
    Issue date:

    Morrissey KA, Sampson JM, Rivera M, Bu L, Hansen VL, Gemmell NJ, Gardner MG, Bertozzi T and Miller RD
    The Journal of Immunology
    https://doi.org/10.4049/jimmunol.2101158

  • Haplotype-resolved assembly of diploid genomes without parental data

    Published Papers
    Issue date:

    Cheng H, Jarvis ED, Fedrigo O, Koepfli K-P, Urban L, Gemmell NJ and Li H
    Nature Biotechnology
    https://doi.org/10.1038/s41587-022-01261-x

  • Metabolic Diversity and Aero-Tolerance in Anammox Bacteria from Geochemically Distinct Aquifers

    Published Papers
    Issue date:

    Mosley OE, Gios E, Weaver L, Close M, Daughney C, Raaij Rvd, Martindale H and Handley KM
    mSystems
    https://doi.org/10.1128/msystems.01255-21

  • Data Analysis of DNA MethylationEpigenome-Wide Association Studies (EWAS): A Guide to the Principles of Best Practice

    Published Papers
    Issue date:

    Bhjat B and Jones GT
    Methods in Molecular Biology
    https://doi.org/10.1007/978-1-0716-2140-0_2

  • The genome of low‐chill Chinese plum “Sanyueli” (Prunus salicina Lindl.) provides insights into the regulation of the chilling requirement of flower buds

    Published Papers
    Issue date:

    Fang Z-Z, Lin-Wang K, Dai H, Zhou D-R, Jiang C-C, Espley RV, Deng C, Lin Y-J, Pan S-L and Ye X-F
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13585

  • Ethical, Legal, and Social Issues in the Earth BioGenome Project

    Published Papers
    Issue date:

    Sherkow JS, Barker KB, Braverman I, Cook-Deegan R, Durbin R, Easter CL, Goldstein MM, Hudson M, Kress WJ, Lewin HA, Mathews DJH, McCarthy C, McCartney AM, da Silva M, Torrance AW and Greely HT
    Proc Natl Acad Sci USA, 119(4), 2022
    https://pubmed.ncbi.nlm.nih.gov/35042809/

  • Who are you? A framework to identify and report genetic sample mix‐ups

    Published Papers
    Issue date:

    Duntsch L, Brekke P, Ewen JG and Santure AW
    Molecular Ecology Resources
    https://doi.org/10.1111/1755-0998.13575