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Latest publications

  • High-quality assemblies for three invasive social wasps from the Vespula genus

    Published Papers
    Issue date:

    Thomas W R Harrop, Joseph Guhlin, Gemma M McLaughlin, Elizabeth Permina, Peter Stockwell, Josh Gilligan, Marissa F Le Lec, Monica A M Gruber, Oliver Quinn, Mackenzie Lovegrove, Elizabeth J Duncan, Emily J Remnant, Jens Van Eeckhoven, Brittany Graham, Rosemary A Knapp, Kyle W Langford, Zev Kronenberg, Maximilian O Press, Stephen M Eacker, Erin E Wilson-Rankin, Jessica Purcell, Philip J Lester, Peter K Dearden
    G3: Genes, Genomes, Genetics
    https://academic.oup.com/g3journal/article/10/10/3479/6053558

  • Ethical, Legal, and Social Issues in the Earth BioGenome Project

    Published Papers
    Issue date:

    Jacob S Sherkow, Katharine B Barker, Irus Braverman, Robert Cook-Deegan, Richard Durbin, Carla L Easter, Melissa M Goldstein, Maui Hudson, W John Kress, Harris A Lewin, Debra J H Mathews, Catherine McCarthy, Ann M McCartney, Manuela da Silva, Andrew W Torrance, Henry T Greely. 
    University of Illinois College of Law Legal Studies Research Paper
    https://pubmed.ncbi.nlm.nih.gov/35042809/

  • Insights into the effect of human civilization on Malus evolution and domestication

    Published Papers
    Issue date:

    Pengxiang Chen, Zhongxing Li, Dehui Zhang, Wenyun Shen, Yinpeng Xie, Jing Zhang, Lijuan Jiang, Xuewei Li, Xiaoxia Shen, Dali Geng, Liping Wang, Chundong Niu, Chana Bao, Mingjia Yan, Haiyan Li, Cuiying Li, Yan Yan, Yangjun Zou, Diego Micheletti, Emily Koot, Fengwang Ma, Qingmei Guan 
    Plant Biotechnology Journal
    https://pubmed.ncbi.nlm.nih.gov/34161653/

  • The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae

    Published Papers
    Issue date:

    Hilary S. Ireland, Chen Wu, Cecilia H. Deng, Elena Hilario, Ali Saei, Sylvia Erasmuson, Ross N. Crowhurst, Karine M. David, Robert J. Schaffer & David Chagné 
    Horticulture Research. DOI    
    https://www.nature.com/articles/s41438-021-00662-4

  • Genome streamlining, plasticity and metabolic versatility distinguish co-occurring toxic and non-toxic cyanobacterial strains of Microcoleus

    Published Papers
    Issue date:

    Tee HS, Wood SA, Bouma-Gregson K, Lear G, Handley KM.
    mBio. doi:10.1128/mBio.02235-21.
    https://pubmed.ncbi.nlm.nih.gov/34700377/

  • Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling

    Published Papers
    Issue date:

    Tee HS, Waite DW, Lear G, Handley KM.
    Microbiome 9: 190.
    https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01145-3
    Video abstract https://www.youtube.com/watch?v=smx-H3wVw_A)

  • An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome

    Published Papers
    Issue date:

    McCartney et al.    
    Molecular Ecology Resources
    https://pubmed.ncbi.nlm.nih.gov/33955186/

  • Greening C. Termite gas emissions select for hydrogenotrophic microbial communities in termite mounds

    Published Papers
    Issue date:

    Chiri E, Nauer PA, Lappan R, Jirapanjawat T, Waite DW, Handley KM, Hugenholtz P, Cook PLM, Arndt SK, Greening C. 
    PNAS 118: e2102625118.
    https://www.pnas.org/content/118/30/e2102625118

  • Genomic adaptations enabling Acidithiobacillus distribution across wide ranging hot spring temperatures and pHs

    Published Papers
    Issue date:

    Sriaporn C, Campbell KA, Van Kranendonk MJ, Handley KM. 
    Microbiome. 9,135, 2021
    https://doi.org/10.1186/s40168-021-01090-1 
    Video abstract: https://www.youtube.com/watch?v=kqM1jPyMRyc)

  • Strategies for successful cyanobacterial proliferation in freshwater

    Published Papers
    Issue date:

    S Wood, HS Tee, KM Handley
    Nature Research Microbiology Community, May 2020
    https://microbiologycommunity.nature.com/posts/strategies-for-successful-cyanobacterial-proliferation-in-freshwater

  • Heterozygous ANKRD17 loss-of-function variants cause a syndrome with intellectual disability, speech delay, and dysmorphism

    Published Papers
    Issue date:

    Chopra et al.     
    American Journal of Human Genetics
    https://www.cell.com/ajhg/fulltext/S0002-9297(21)00138-5

  • Tools for successful proliferation: Diverse strategies of nutrient acquisition by a benthic cyanobacterium

    Published Papers
    Issue date:

    HS Tee, D Waite, L Payne, M Middleditch, S Wood, KM Handley
    The ISME Journal, 14, 2020
    https://doi.org/10.1038/s41396-020-0676-5

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