Publications

Our publications are listed here by project.

We also publish Genomics Aotearoa blogs.

Environmental metagenomics

Strategies for successful cyanobacterial proliferation in freshwater
S Wood, HS Tee, KM Handley
Nature Research Microbiology Community, May 2020

Tools for successful proliferation: Diverse strategies of nutrient acquisition by a benthic cyanobacterium
HS Tee, D Waite, L Payne, M Middleditch, S Wood, KM Handley
The ISME Journal, May 2020, https://doi.org/10.1038/s41396-020-0676-5

Determining microbial roles in ecosystem function: Redefining microbial food webs and transcending kingdom barriers
KM Handley
mSystems 4(3), e00153-19, May/June 2019, doi:10.1128/mSystems.00153-19

Te nohonga kaitiaki

Rights, interests and expectations: Indigenous perspectives on unrestricted access to genomic data
M Hudson, N Garrison, R Sterling, N Caron, K Fox, J Yracheta, J Anderson, P Wilcox, L Arbour, A Brown, T Kukutai, M Taualii, R Haring, G Baynam, P Dearden, D Chagné, R Malhi, I Garba, N Tiffin, M Stott, A Rolleston, A Sporle, M Walter, D David-Chavez, R Lovett, J Reading, B Te Aika, D Bolnick, L Ballantyne, A Martinez, S Carroll
Nature Reviews Genetics, 21, 377–384, April 2020, https://doi.org/10.1038/s41576-020-0228-x

Indigenous genomic databases: Pragmatic considerations and cultural contexts
NR Caron, M Chongo, M Hudson, L Arbour, WW Wasserman, S Robertson, S Correard, P Wilcox
Frontiers in Public Health, 8, 111, April 2020, https://doi.org/10.3389/fpubh.2020.00111

High quality genomes

Science at the intersection of cultures – Māori, Pākehā and mānuka
ER Morgan, NB Perry, D Chagné
NZ Journal of Crop & Horticultural Science, 47:4, 2019, https://doi.org/10.1080/01140671.2019.1691610

Phylogenetic determinants of toxin gene distribution in genomes of Brevibacillus laterosporus
TR Glare, A Durrant, C Berry, L Palma, MM Ormskirk, MP Cox
Genomics, 112(1):1042-1053, January 2020, doi.org/10.1016/j.ygeno.2019.06.020

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
KA Panfilio et al.
Genome Biology, 20(1):64, April 2019

Evolution of the Torso activation cassette, a pathway required for terminal patterning and moulting
J Skelly, C Pushparajan, EJ Duncan, PK Dearden
Insect Molecular Biology, December 2018, doi.org/10.1111/imb.12560

Aotearoa New Zealand genomic variome

Genomic medicine must reduce, not compound, health inequities: The case for hauora-enhancing genomic resources for New Zealand
S P Robertson, J Harré Hindmarsh, S Berry, V A Cameron, M P Cox, O Dewes, R N Doughty, G Gray, J C Jacobsen, A Laurence, E Matisoo-Smith, S Morton, A N Shelling, D Sika-Paotonu, A Rolleston, J R Skinner, R G Snell, A Sporle, C Print, T R Merriman, M Hudson, P Wilcox
New Zealand Medical Journal, 131, 1480, 17 August 2018

More on the Aotearoa New Zealand genomic variome

Genomic translational oncology

Mapping a route to Indigenous engagement in cancer genomic research
K Henare, K Parker, H Wihongi, C Blenkiron, R Jansen, P Reid, M Findlay, B Lawrence, M Hudson, C Print
The Lancet Oncology, 20:6, June 2019

A predictor of early disease recurrence in breast cancer patients using a cell-free RNA and protein liquid biopsy
A Lasham, SJ Fitzgerald, N Knowlton, T Robb, P Tsai, MA Black, L Williams, SY Mehta, G Harris, AN Shelling, C Blenkiron, CG Print
Clinical Breast Cancer, in press 2019

Recurrent loss of heterozygosity correlates with clinical outcome in pancreatic neuroendocrine cancer
B Lawrence et al.
NPJ Genomic Medicine, 3:18, July 2018

Epigenome-wide association study technology

DNA methylation profiling identifies a high effect genetic variant for lipoprotein(a) levels
GT Jones, J Marsman, B Bhat, VL Phillips, A Chatterjee, EJ Rodger, MJA Williams, AM van Rij, SPA McCormick.
Epigenetics, April 2020

A variant of the castor zinc finger 1 (CASZ1) gene is differentially associated with the clinical classification of chronic venous disease
G Jones et al.
Scientific Reports, 9, 14011, 2019

More on Epigenome-wide association study technology

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